Workflows

These pages describe common analysis patterns. They are not the only possible graphs; they are starting points that make the main scientific decisions visible.

Workflow	Use when
Segmentation And Label Cleanup	You need masks, labels, and object IDs.
Object Measurements And Tables	You need morphology, intensity, metadata columns, summaries, or CSV output.
Skeleton And Network Analysis	You need curvilinear structure QC and network measurements.
Colocalization And Association	You need pixel, ROI, object, or label association analysis.
PSF And Deconvolution	You need PSF-aware restoration.
Process a folder	You need deterministic pairing, representative review, saved configuration, and provenance for a local collection.

Rule Of Thumb

Build and tune the workflow interactively first. Add Batch Output nodes only after the intermediate images, masks, labels, and tables are scientifically reasonable.