Reference¶
Use reference pages for exact release facts; use tutorials and how-to guides for task sequences.
| Page | Use |
|---|---|
| 0.16.0a7 release notes | Review initial source loading, guarded recovery recalculation and workflow-save path choices. |
| 0.16.0a2 release notes | Review registration, reusable transforms, per-label skeletons and CPU median acceleration. |
| 0.16.0a1 release notes | Review Results Workspace, descriptive statistics and plots, batch measurement collection and seeded compartments. |
| CPU and GPU compute | Choose CPU, Auto, Prefer GPU, or Custom; read exact eligibility, benchmarks, badges, fallback, and provenance. |
| All nodes | Search release node titles, families, types, and execution policy. |
| Toolbar and settings | Look up controls, preview, execution, and memory settings. |
| Graph display settings | Choose thumbnail view, contrast population, resolution, and port labels. |
| Intensity and thresholds | Check histogram populations, cutoff modes, and precision limits. |
| Fiji/ImageJ compatibility | Choose explicit compatibility operations, match reference versions and distinguish numerical evidence from source-aligned targets. |
| Seeded segmentation | Compare CellProfiler Propagation with existing 3D watershed; check inputs, intensity scale and calibration limits. |
| CellProfiler compartment profile | Match the statistics paper's smoothing, nuclear objects, competing seeds, cell filtering and cytoplasm definition. |
| Channel and axis controls | Split/extract channels, compose RGB, resize axes, and supply acquisition metadata. |
| Registration and image comparison | Estimate and apply whole-volume transforms, preserve labels, and compare valid overlap (new in 0.16.0a2). |
| Template matching and peaks | Locate fixed-orientation patterns, interpret calibrated scores and export detection tables (new in 0.16.0a3). |
| Time-series tracking | Link frame-local detections or object centroids, review trajectories and interpret calibrated motion (new in 0.16.0a3). |
| Measurement tables and units | Preserve identity keys and understand physical-column and mesh limits. |
| Statistics methods and counts | Define descriptive summaries, weighting, exclusions and legacy behavior (new in 0.16.0a1). |
| Skeleton nodes | Interpret component, branch, graph, and whole-network outputs. |
| Colocalization metrics | Read exact Pearson, Manders, and Costes definitions and compatibility limits. |
| RACC-like index | Understand the regression geometry, parameters, and failure cases. |
| Object association | Distinguish overlap, nearest-centroid, and event-region measurements. |
| Example workflows | Choose one of 35 guided examples, including linked image review, detection, tracking, registration and separate developer/testing workflows. |
| Linked image review | Review aligned paired inputs with presentation-only recipes, controls and explicit RGB rendering boundaries. |
| Bundled sample data | Choose one of 34 deterministic samples. |
| Workflow and export contract | Understand schema 6 SourceItems, compute and bypass intent, shared-executor Python/CLI, and version-5 batch artifacts. |
| Supported input and output | Select a format and review metadata/dtype limitations. |
| Cache and memory | Understand responsiveness and RAM behavior. |
| Validation status | Separate current evidence from claim gaps. |
| Versions and compatibility | Match stable/nightly manuals and alpha software. |
| Privacy | Understand site analytics, browser-local preferences, and hosting. |
| Licence and reuse | Reuse manual text or screenshots with the correct attribution. |